PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002037
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 336aa    MW: 35891.1 Da    PI: 5.0184
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-32966PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-728133731PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.95.9e-15144197457
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                 k+ rr+ +NRe+ArrsR+RK+a +  Le  v  L++eN  L k+l  ++++++
  Sof002037 144 AKKMRRMLSNRESARRSRKRKQAHLNDLESQVSRLTSENAYLLKRLADMTQKYK 197
                699************************************999966655555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-14141205IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.369143195IPR004827Basic-leucine zipper domain
PfamPF001702.7E-12144197IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.6E-13145197No hitNo description
SuperFamilySSF579594.34E-12145196No hitNo description
CDDcd147021.28E-20146196No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
PfamPF124981.7E-24212317IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
PIRSPPWSTR YEKGSDLAPG VAGGGSDDDD VVEVSCGGRG GGDPGSYAAV LKRKLDLYCA  60
AVAKSMEAKS QESSLGYPNS QASDTSQLIS QASFDGDIDG AGLVTNSNVI EDDDFQGKPA  120
NSGTSKELSD DDGDLEETID PSNAKKMRRM LSNRESARRS RKRKQAHLND LESQVSRLTS  180
ENAYLLKRLA DMTQKYKDAS LDNKNLTVDI ETMRRKVNIA EEAVRRLTGT TLMLSTAFDK  240
PASSTPLSSC ASDAASASVA IEDSMKHXLQ APLQNGQIKL DIPXAAIPLT SGVMGTKPAS  300
LQRVASLENL QKRIVGDSMH SETASTFSGX EALADR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRSRKRK
2157164RRSRKRKQ
3159164SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.58290.0crown| inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442478.10.0light-inducible protein CPRF2 isoform X2
TrEMBLC5YRE40.0C5YRE4_SORBI; Uncharacterized protein
STRINGSb08g020600.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-30bZIP family protein