PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001355
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 539aa    MW: 58708 Da    PI: 6.9245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17390379PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-40137PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11107132126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C++++++GtC++G +CkF+H+
  Sof001355 107 PGEPDCSYYLKFGTCRFGIKCKFNHP 132
                5789*********************8 PP
2zf-CCCH25.32.6e-08250272325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                +e+C++++  G Ck+G  Ck+ H
  Sof001355 250 QEECKYYSTPGGCKFGKACKYLH 272
                589******************** PP
3zf-CCCH33.38.5e-11297321226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG Ck+  +CkF+H+
  Sof001355 297 GEKECPYYMRTGSCKFATNCKFHHP 321
                7899********************9 PP
4zf-CCCH22.42.2e-07443469127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++f ++G+Cky  +C+F+H++
  Sof001355 443 PGQPECQHFIKSGFCKYRMKCRFHHPR 469
                5789*********************96 PP
5zf-CCCH23.68.7e-08489514227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C ++ r+G+CkyG+ C F+H++
  Sof001355 489 DQPMCTYYGRYGFCKYGPACMFNHPF 514
                6799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.2E-5106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774106134IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5111134IPR000571Zinc finger, CCCH-type
SMARTSM003560.0046247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84247275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5251275IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-6251272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4253274IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793295323IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4301320IPR000571Zinc finger, CCCH-type
SMARTSM003560.11442469IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807442470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5446471IPR000571Zinc finger, CCCH-type
SMARTSM003560.032487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493487515IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5488515IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4493514IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MADADAKPPP HDAAASLVPS ISPSSVGAGD AADEDEIEKQ LAGLGIAVAG NSSGFPEPSG  60
WDDGPVPVPI TAAVLVGGDE GADEKAPAPA PAPTGAVDVK VRFPRRPGEP DCSYYLKFGT  120
CRFGIKCKFN HPARKKKSSR VRGSGSNSSS NKASSPDDDQ APREEYEGLV PDISDSMGFD  180
DKGSLSSSEN HRKMSYEVID MKRGKLEPKE KICEEPEKGI YFMKLDETNV TTQKGAKDKR  240
KETFAEGNAQ EECKYYSTPG GCKFGKACKY LHREGKEGKT EVEKAELNFL GLPLRPGEKE  300
CPYYMRTGSC KFATNCKFHH PDPTNAPSKE PGLEHENADT PLQNVQGSSQ PSLQIWPDQR  360
TLNEQHVPFL APAPSYGGGM VPPQGMYPSP DWSGYHQVPL NPYYPPGVPF PHFPAAHMNH  420
PMYKAADIPG NQPLPSDEYP ERPGQPECQH FIKSGFCKYR MKCRFHHPRS RQSAPLTGLS  480
PIGLPIKPDQ PMCTYYGRYG FCKYGPACMF NHPFNFGPPV PAAGPALPGQ YTIPGNFTV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.79030.0callus| crown| inflorescence| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442111.10.0zinc finger CCCH domain-containing protein 65 isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A1Z5R5T80.0A0A1Z5R5T8_SORBI; Uncharacterized protein
STRINGSb08g012360.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]