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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sof000934 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
ERF |
| Protein Properties |
Length: 248aa MW: 27489.7 Da PI: 9.9203 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Sof#S17468944 | PU_ref | Unigene | View CDS |
| PUT-157a-Saccharum_officinarum-919 | PU_unref | plantGDB | View CDS |
| PUT-157a-Saccharum_officinarum-921 | PU_unref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61.1 | 2.5e-19 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp + r++lg+f ++eeAa+a++a +++++g
Sof000934 113 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 162
69*******.**********94....35************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MCGGAILDDL REPELRRVTD RDIWQKKKPN RGGGGGRRSF AADDEDFEAD FEHFEADSGD 60
SDFELGEGAD DDVVEIKPFA AKGTFSRGGL STMTTADYDA PVARSAKRKR KNQYRGIRQR 120
PWGKWAAEIR DPQKGVRVWL GTFNSPEEAA RAYDAEARRI RGKKAKVNFP DAPAVGQKRR 180
SGSASAKAPK SVLKEACRKA AMTGDTNASF YPSGNYPFNN SIVSMPLCLH SHNELLRLRV 240
RIHNESGL
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.17917 | 0.0 | bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
| Publications
? help Back to Top |
- Kim CY, et al.
Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
[PMID:10755311] - Koo SC, et al.
OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
[PMID:19607808] - Iwamoto M,Takano M
Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
Biotechnol. Lett., 2011. 33(1): p. 173-8
[PMID:20872166] - Serra TS, et al.
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
Plant Mol. Biol., 2013. 82(4-5): p. 439-55
[PMID:23703395] - Jisha V, et al.
Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
PLoS ONE, 2015. 10(6): p. e0127831
[PMID:26035591] - Lourenço TF, et al.
The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
Plant Physiol., 2015. 169(3): p. 2275-87
[PMID:26381316]
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