PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000332
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 386aa    MW: 43067.4 Da    PI: 4.7543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17478002PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-83149PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-83151PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-5061331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd+ ++  +++
  Sof000332   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRIITL-NSR 103
                79*************************988.89**************95335666777*************************************9.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kktL+f++g+apkg +tdWvm ey++
  Sof000332 104 TVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-623156IPR003441NAC domain
PROSITE profilePS5100557.7666156IPR003441NAC domain
PfamPF023651.4E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRIITL NSRTVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDEDLVS AGFSKDAYVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE  180
AESSMFPLMT SSEVVNPTEG PRAQPAAPAG ALQEPPLHNS SATCAGEESS FDHATANTCA  240
EDVTFGYTVA SSAIQDIPAQ MSGDGVVSVN NISNEANDMY SPCDCDGFLL EELSRFLNDS  300
PVRNTPFGEC SGLPPMPEAE AHAFEVNSFG LFNELLRLVG FEAWITTLTP TMWIPQITFG  360
LPPERKLSRG DYMGTKLDFW VRNQIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-53215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.70810.0bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302870.10.0NAC domain-containing protein 82-like
TrEMBLA0A1B6P8R40.0A0A1B6P8R4_SORBI; Uncharacterized protein
STRINGSb09g020880.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-84NAC domain containing protein 103