PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof000166
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 334aa    MW: 37182.6 Da    PI: 6.5228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17456617PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-8685PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-8687PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-959133727PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-959133728PU_refplantGDBView CDS
PUT-157a-Saccharum_officinarum-959133729PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52331581128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+yk++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v   +g++ 
  Sof000166  33 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGVREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RGRTL 130
                79****************************.88***************8878899*************************************99.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kk Lvfy g+ap+g+ktdW+mheyrl
  Sof000166 131 GIKKALVFYAGKAPRGVKTDWIMHEYRL 158
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6429185IPR003441NAC domain
PROSITE profilePS5100560.25133185IPR003441NAC domain
PfamPF023653.5E-2734158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
XPPSVGFIRR QQPDQGMGVP VRRERDAEAE LNLPPGFRFH PTDDELVEHY LCRKAAGQRL  60
PVPIIAEVDL YKFDPWDLPE RALFGVREWY FFTPRDRKYP NGSRPNRAAG NGYWKATGAD  120
KPVAPRGRTL GIKKALVFYA GKAPRGVKTD WIMHEYRLAD AGRAXXXKKG SLXLDDWVLC  180
RLYNKKNEWE KMQLGKESAA GVGTTKEEAM DMTTSHSHSH SQSHSHSWGE TRTPESEIVD  240
NDPFPELDSF PAFQDPAAAM MMVPKKEQVD DGSAAANAAK SSDLFVDLSY DDIQGMYSGL  300
DMLPPPGEDF YSSLFASPRV KGNQPGGAAG LGPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-110211913174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.42190.0bud| callus| crown| inflorescence| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466217.10.0NAC domain-containing protein 67
SwissprotQ75HE51e-172NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A097C0Q30.0A0A097C0Q3_9POAL; NAC2
STRINGSb01g003710.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-87NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]