PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K024600.1.p
Common NameSb2273s002010, SORBIDRAFT_2273s002010, SORBI_K024600
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 264aa    MW: 28104.6 Da    PI: 6.5091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K024600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-1295140454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RRd++N +f eLr  +P+       +++ a+ L  A  YI +L
  Sobic.K024600.1.p  95 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDRASLLAAAAAYIGEL 140
                        799***********************6.....49**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.35491140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1593155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-995140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.80E-695126No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1595154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDELVYPASS CSSPSPTSFS AAGHFEELEF VSWDVPEEWM EGNDWFDEPL ADGDEGCRSA  60
GNGDLSGSGE PPAPAPAPKR RGRKPGPRTN GPTISHVEAE RQRRDKLNRR FCELRAAVPT  120
VSRMDRASLL AAAAAYIGEL RDRVEQLEAE AKQAASAAVT TAAAAAATHH HHSFGLLQGK  180
LGLEVRMLAG LDAAALRLTT TTARHAPAHL MLALRSLDLQ VQHACVCRVN GVAVQDAVVD  240
VPAGLRDERG LRAALLHKLQ QSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1794156769Transcription factor MYC2
5gnj_B2e-1794156769Transcription factor MYC2
5gnj_E2e-1794156769Transcription factor MYC2
5gnj_F2e-1794156769Transcription factor MYC2
5gnj_G2e-1794156769Transcription factor MYC2
5gnj_I2e-1794156769Transcription factor MYC2
5gnj_M2e-1794156769Transcription factor MYC2
5gnj_N2e-1794156769Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K024600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002488895.10.0transcription factor MYC2
RefseqXP_021321554.10.0transcription factor MYC2-like
TrEMBLC6JSR80.0C6JSR8_SORBI; Uncharacterized protein
STRINGSb2273s002010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1735523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-14bHLH family protein