PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.K023500.1.p
Common NameSORBI_K023500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 435aa    MW: 46005.8 Da    PI: 8.0524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.K023500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09255302455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Sobic.K023500.1.p 255 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 302
                        8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-15249308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-11249306No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15251307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6255302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAHDGFFGGF HDLSWPLDHA AAARAAPFDP LREVVHVPHA LMGAGARWEH DAAVGALVPS  60
QSPSPSPSSL ATAAAVGGGD VVEAALMEQL AGRLGVSVPS PRSSRYTSCH SSTVDKPAAL  120
LSCFLASVGK LSRVGSSQSL LREQAPAPEP APLPGAVKQH ASDGSCSDGP CRKRKASGGK  180
SKAKVVVTPA APKSRAPETR AKKCKLSTDV GHDDEEQKPA AGEAWHDNSN GKEVAAEPSK  240
DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CSKVTGKAVM LDEIINYVQS  300
LQRQVEQNGL LSQQFLSMKL STVNPRLKLD VDSCIPKDAN KLFAQTTSTI AQPLPPVYAL  360
EGSSSAFCYT SSPGTAAQSV VTNAKGFGMH SSLMNHGDVD RSLEGHQNTN PQMGSLWEED  420
DLQSLVLMGF RGNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.K023500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.11e-167transcription factor bHLH62
TrEMBLA0A109NDS50.0A0A109NDS5_SORBI; Uncharacterized protein
STRINGSb0010s017130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-48bHLH family protein