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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.K005500.1.p | ||||||||
Common Name | SORBI_K005500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35157.5 Da PI: 7.7935 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.3e-15 | 118 | 169 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ Sobic.K005500.1.p 118 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YGQRGDQASIVGGAINYVRELE 169 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.97E-15 | 116 | 173 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 116 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-17 | 116 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.298 | 117 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-12 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-12 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MALLDAVVHP SQPQGHLGYG HRDYCSYGAP FFWSDATGHG DNHVPYAGDW DPFLLASLVH 60 NAEESGKVVG SSKASPEREV ALSSAIEPPS SPVMTTTAKR KRRRANKVVK NEEEMESQRM 120 THIAVERNRR RQMNEYLAVL RSLMPPSYGQ RGDQASIVGG AINYVRELEQ LLQSLEVHRS 180 LQEHSSNSKS CNPFAAFFSF PQYSSATSSS HSGAGNHTIK VSAGSSRSPS SSVVTADIEA 240 SMVDGHASVK VQAPRRPRQL LRLAAGLQQL GLTTLHLNVS TAGTMVMYAF SLKVEVDCKL 300 GSVEEIAAAV HEILGRIQDE AGFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | KRKRRR |
2 | 99 | 103 | RKRRR |
3 | 118 | 129 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.K005500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058809 | 2e-59 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002489234.2 | 0.0 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 2e-70 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A109NDP6 | 0.0 | A0A109NDP6_SORBI; Uncharacterized protein | ||||
STRING | Sb0012s004780.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.K005500.1.p |
Publications ? help Back to Top | |||
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