PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 325aa MW: 35157.5 Da PI: 7.7935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.K005500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.1	4.3e-15	118	169	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ Sobic.K005500.1.p 118 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YGQRGDQASIVGGAINYVRELE 169 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.97E-15	116	173	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	116	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-17	116	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.298	117	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-12	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-12	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MALLDAVVHP SQPQGHLGYG HRDYCSYGAP FFWSDATGHG DNHVPYAGDW DPFLLASLVH 60 NAEESGKVVG SSKASPEREV ALSSAIEPPS SPVMTTTAKR KRRRANKVVK NEEEMESQRM 120 THIAVERNRR RQMNEYLAVL RSLMPPSYGQ RGDQASIVGG AINYVRELEQ LLQSLEVHRS 180 LQEHSSNSKS CNPFAAFFSF PQYSSATSSS HSGAGNHTIK VSAGSSRSPS SSVVTADIEA 240 SMVDGHASVK VQAPRRPRQL LRLAAGLQQL GLTTLHLNVS TAGTMVMYAF SLKVEVDCKL 300 GSVEEIAAAV HEILGRIQDE AGFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	103	KRKRRR
2	99	103	RKRRR
3	118	129	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.K005500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058809	2e-59	AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002489234.2	0.0	transcription factor bHLH96
Swissprot	Q9C7T4	2e-70	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A109NDP6	0.0	A0A109NDP6_SORBI; Uncharacterized protein
STRING	Sb0012s004780.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.K005500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]