PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G269700.1.p
Common NameSb10g030470, SORBIDRAFT_10g030470
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 383aa    MW: 40919.6 Da    PI: 4.48
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G269700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11217259754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sobic.010G269700.1.p 217 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 259
                           79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.06E-5203264No hitNo description
PROSITE profilePS5088815.269210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16214284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15217276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9217259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.68E-5310348No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MALASSTLPL PLTTTTPPSS SSQDIAATTT SFCAYPLAFF GFEEKAAAME LDEQAFLEEI  60
LSLRRDATWD CNAMGDFFSP AAAMDCSFQD RQHQVPTVSV LPTFTASYAQ PQPQPTAAPG  120
FDCLSEVYGA AAAFGGPNAG DYGGEMGFLD VVEPKAAAAD GVGVGGAAAG LEVCKVEPVL  180
AESGGAFGPG PGLGAAPTPA PASKKKRVEG MPSKNLMAER RRRKRLNDRL SMLRSVVPKI  240
SKMDRTSILG DTIDYMKELL ERIKLLQEEI EEQQQEAPGM LSVCRELNPI EMVARNIPKF  300
DVERKEGGDT RVEIYCAAKP GLLLSTVSTL DTLGLDIQQC VISCFNDFGM HASCSEMQRD  360
MISAEAIKQE LFNNAGYSGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204224KKRVEGMPSKNLMAERRRRKR
2218225ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G269700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0239860.0BT023986.1 Zea mays clone EL01N0413D04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437610.10.0anthocyanin regulatory R-S protein
TrEMBLC5Z1Y70.0C5Z1Y7_SORBI; Uncharacterized protein
STRINGSb10g030470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-47beta HLH protein 93