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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G269000.1.p | ||||||||
Common Name | Sb10g030400, SORBIDRAFT_10g030400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 161aa MW: 17691 Da PI: 8.729 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.2 | 1.5e-17 | 88 | 144 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +++r +r+++NRe+A rsR+RK+a++e+Le++v L eN +Lkk+ +elk eva+l Sobic.010G269000.1.p 88 DDRRSIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVAAL 144 5799************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-16 | 83 | 144 | No hit | No description |
SMART | SM00338 | 1.9E-14 | 86 | 150 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.53 | 88 | 144 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-14 | 89 | 144 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.49E-18 | 90 | 144 | No hit | No description |
SuperFamily | SSF57959 | 1.81E-12 | 90 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAANYHHYQM AVHAAAAAAA WREPDSPQLS FVSGCSSLFS ISTLQDDDDD GRPAVVIAGH 60 AMPSTPVSLA GFAAGDEVDM EVQQASGDDR RSIRMMRNRE SALRSRARKR AYVENLEKEV 120 RRLVDENLKL KKQCKELKLE VAALVLPTKS SLRRTSSTQF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G269000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033858 | 0.0 | BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439039.1 | 1e-115 | protein FD | ||||
TrEMBL | C5Z1Y0 | 1e-114 | C5Z1Y0_SORBI; Uncharacterized protein | ||||
STRING | Sb10g030400.1 | 1e-115 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 | Representative plant | OGRP9528 | 5 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-09 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G269000.1.p |
Entrez Gene | 8065005 |