PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G267500.1.p | ||||||||
Common Name | Sb10g030250, SORBIDRAFT_10g030250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 274aa MW: 29201.7 Da PI: 6.4948 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.6 | 6.2e-09 | 101 | 144 | 8 | 51 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ Sobic.010G267500.1.p 101 KRPSGNRAAVRKYREKKKAHTASLEEEVVHLRALNQQLMKKLQS 144 56667***********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-7 | 94 | 161 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.4E-15 | 95 | 151 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-12 | 97 | 162 | No hit | No description |
SuperFamily | SSF57959 | 4.64E-8 | 99 | 145 | No hit | No description |
CDD | cd14686 | 4.62E-12 | 106 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDDGDLDFSN PDTYLCPALG TDPPSSCSMD SYFDEILKDT EHHACTHTHT CNPPVHDLSH 60 THTCVHVHTK IVAASPGDDA AESPSENNTN TTGNSNAASK KRPSGNRAAV RKYREKKKAH 120 TASLEEEVVH LRALNQQLMK KLQSHATLEA EVARLRCLLV DIRGRIEGEI GAFPYQRPPV 180 KNVDLVSSVD QGSFLGGAGT AQVTNACDFR CKDQMYCNPG MQGAISGQVL GQGACDVASI 240 QCIGSNKSGS TKLPVCGGMD TVPAVCLPNV ENK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15041 | 0.0 | callus| leaf| pollen| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G267500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040304 | 0.0 | BT040304.1 Zea mays full-length cDNA clone ZM_BFc0080C17 mRNA, complete cds. | |||
GenBank | HQ858662 | 0.0 | HQ858662.1 Zea mays clone UT601 bZIP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439031.1 | 0.0 | basic leucine zipper 23 | ||||
Refseq | XP_021305063.1 | 0.0 | basic leucine zipper 23 | ||||
Swissprot | Q8VY76 | 6e-74 | BZP19_ARATH; Basic leucine zipper 19 | ||||
TrEMBL | C5Z1W5 | 0.0 | C5Z1W5_SORBI; Uncharacterized protein | ||||
STRING | Sb10g030250.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35040.1 | 4e-64 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G267500.1.p |
Entrez Gene | 8069197 |
Publications ? help Back to Top | |||
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