PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G262200.1.p

Common Name

Sb10g029840, SORBIDRAFT_10g029840

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

DBB

Protein Properties

Length: 306aa MW: 31883.4 Da PI: 4.4487

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G262200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.1	1.6e-07	3	46	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ ++ ++ C ++ lC C H+ H+++p Sobic.010G262200.1.p 3 VRCDFCGAAPAAVLCWADEAALCSACDRRVHRAnklvhkHRRIP 46 69*****************************7799996666655 PP
2	zf-B_box	25.4	3e-08	64	105	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++e + fC +++ lC+dC + +H+ Ht Sobic.010G262200.1.p 64 APLCDVCKERRGLVFCVEDRAILCPDCDDPIHSAndltakHT 105 579*****************************6577777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.253	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.8E-9	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.1E-6	3	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.80E-7	3	47	No hit	No description
PROSITE profile	PS50119	9.086	62	109	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-14	62	109	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.3E-6	65	106	IPR000315	B-box-type zinc finger
CDD	cd00021	7.16E-8	65	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005634	Cellular Component	nucleus
GO:0000989	Molecular Function	transcription factor activity, transcription factor binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MQVRCDFCGA APAAVLCWAD EAALCSACDR RVHRANKLVH KHRRIPLVQP ASGNVSDADA 60 DAAAPLCDVC KERRGLVFCV EDRAILCPDC DDPIHSANDL TAKHTRFLLV GAKLSAELVD 120 QAPASPDDDD DDDDACGRDT RAAAEPDAVP ALGAQGSCAA KASALESGSV GGGSSISDYL 180 TNICPGWRVD DLLFDDPAFS AASQKASGYS DDGHEQVPSL DADLFDVVAG GRPGKRGGVW 240 STGAGALGFD KATPASVVAV PTQGFVREMS WNSDSDSDVF AVPEFPHPPP AKKARPAPAS 300 TFWCF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G262200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304501.1	0.0	B-box zinc finger protein 20
TrEMBL	C5Z1S6	0.0	C5Z1S6_SORBI; Uncharacterized protein
STRING	Sb10g029840.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30
Representative plant	OGRP12714	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	7e-40	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Sobic.010G262200.1.p
Entrez Gene	8065617