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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.010G254900.1.p |
| Common Name | Sb10g029250, SORBIDRAFT_10g029250 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
C3H |
| Protein Properties |
Length: 413aa MW: 44840 Da PI: 8.4995 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G254900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 34.7 | 3e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG++C+F H
Sobic.010G254900.1.p 5 QELCRNFQR-GSCKYGAQCRFVH 26
79*******.************* PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MSRRQELCRN FQRGSCKYGA QCRFVHASSQ QQQQSKPNPF GFGSQQQQAN TNPFGFGSGS 60
RQQQQSSFGA QFQQQQQKPN PFGFGVQGGA AAQSRNASGT AKPFQNKWVR DPSAPTKQQE 120
AAQPAPAAHT SCTDPESCRH QIAEDFKNET PLWKLTCYAH LRSGPCDITG DISFEELRAK 180
AYEEGRQGHP LPSIVEGERN LQNAKLTEFN NFLNNPHLSV SQTPSFPTVA SFPEVKNNSP 240
FGVSQNNGPP VFSSFSQIGA ANNIGPGSRT TPGFPTNSIF GQSNQPSHPG FPTPTFGRSD 300
MKFGVSGSFG SQISQQSSGS LQGSNMSSVG NFPKPHASYQ QSPSSSSHHR DIDRQSQDLL 360
SGIVAPTSAT NQAPVEDNKN ENQDDSIWLK EKWSIGEIPL GEPPQRHISH VF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the adaxial face of the collar, nodes and the basal region of elongating internodes. {ECO:0000269|PubMed:18953406}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU956931 | 0.0 | EU956931.1 Zea mays clone 1577703 nucleic acid binding protein mRNA, complete cds. |
| GenBank | HQ619957 | 0.0 | HQ619957.1 Zea mays clone Yu82 CCCH-type zinc finger protein LIC mRNA, complete cds. |
