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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G254200.2.p | ||||||||
Common Name | Sb10g029190, SORBIDRAFT_10g029190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 441aa MW: 47690.1 Da PI: 9.9821 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.8e-40 | 160 | 236 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak+y+r+hkvC +hskap+v+v+gle+rfCqqCsrfh l efD++krsCrrrL +hn+rrrk+qa Sobic.010G254200.2.p 160 CQVEGCKVDLSSAKDYNRKHKVCVAHSKAPKVVVAGLERRFCQQCSRFHGLAEFDQNKRSCRRRLTHHNARRRKPQA 236 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-32 | 152 | 221 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.223 | 157 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.84E-38 | 158 | 239 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.4E-31 | 160 | 233 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MGSFGMNWNQ KNSMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSSSELGH GSSKSSISAS 60 IDSPSGVGNS LEFNFAAVQR HVKNTGTNGR VDDSGNSPSS MIAFSQGEPL ISLKLGKRAY 120 FENVCGGQEA KVSAPSDVTS AVTVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK 180 VCVAHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQNKRSC RRRLTHHNAR RRKPQADAIS 240 FNSSRLSSMF YDTSHRTNLF FSQPLYGQVR SNAVSPWDNS GGFKFMETKH LSVQPTKTVG 300 LDELHFSTPQ ISTSVVAHTG HHHNFDRFMP FKGTNTKVLN QVSGVEASAT ASNSNNGAPE 360 PGRALSLLSD GSWGSNSAVI QQPPSHADAG ALPPLATVAV SNTAARHPLD PSLGRFWQDD 420 HPPLDGPAPQ IQELAHLRTW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 160 | 233 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G254200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973300 | 0.0 | EU973300.1 Zea mays clone 396397 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438971.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305400.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305401.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305402.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305403.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305404.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305405.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305406.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Refseq | XP_021305407.1 | 0.0 | squamosa promoter-binding-like protein 12 isoform X1 | ||||
Swissprot | A2YGR5 | 1e-156 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A1W0VUS8 | 0.0 | A0A1W0VUS8_SORBI; Uncharacterized protein | ||||
STRING | Sb10g029190.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 5e-36 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G254200.2.p |
Entrez Gene | 8065582 |