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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G247500.1.p |
Common Name | Sb10g028630, SORBIDRAFT_10g028630 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
HD-ZIP |
Protein Properties |
Length: 237aa MW: 25488.7 Da PI: 9.747 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G247500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 98 | 152 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq + Le+ F+ ++ +s+++++eLA++++L++rqV vWFqNrRa+ k
Sobic.010G247500.1.p 98 RKKLRLTKEQSTLLEDTFRAHNILSHAQKQELARQVNLSTRQVEVWFQNRRARTK 152
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 111.9 | 4.3e-36 | 98 | 186 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl+keq++lLE++F++++ L++ +K+elar+++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL+ e ++L++
Sobic.010G247500.1.p 98 RKKLRLTKEQSTLLEDTFRAHNILSHAQKQELARQVNLSTRQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLRLELAQLQR 186
69************************************************************************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MSYSTRAMEE EGFGKSWLGL GIGGGDLMKR SRSPAPVQFD LMLFPRSVKE EAAATASKKA 60 EKGARKRSKT TITDDDGQSS HGGPSPSDDD VAVGAGARKK LRLTKEQSTL LEDTFRAHNI 120 LSHAQKQELA RQVNLSTRQV EVWFQNRRAR TKLKQTEVDC EILKRCCESL TGENQRLRLE 180 LAQLQRSAAA AAGLYVQSFP APATAMASAI CPSCDKVTVT SGGGETSGKS STSYSS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 146 | 154 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU955431 | 9e-52 | EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds. |