PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G223700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 340aa    MW: 36397.9 Da    PI: 8.8963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G223700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-1376120147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Sobic.010G223700.1.p  76 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1670126IPR009057Homeodomain-like
PROSITE profilePS5129414.62871125IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1874123IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.2E-675116IPR009057Homeodomain-like
SMARTSM007172.7E-1075123IPR001005SANT/Myb domain
PfamPF002491.3E-1076120IPR001005SANT/Myb domain
CDDcd001678.67E-878121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVSMSTTPKP LDTAAAVAGG GGGGDEGGGG GGKKQVRGAA AAAAVMAPPP MAVPVPPAAG  60
EEVRKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY  120
FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNDPAVSQA ILSQQQPTQK EQGSVMPMDT  180
ATVRNTNANV AVPSWDNTLA QPFSAGHVQG AVATNNCSSS IESPSGTWPS SEAVEQENVV  240
PPLRAMPDFA RVYSFLGSIF DPDTSGHLQR LKAMDPIDVE TVLLLMRNLS TNLRSPDFEQ  300
HRRLLSSYSY GGGDHVKSEG MENHGSAQSG HLPFLVTSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.203561e-169ovary
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G223700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660740.0BT066074.1 Zea mays full-length cDNA clone ZM_BFb0229E08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438834.20.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A194YKS10.0A0A194YKS1_SORBI; Uncharacterized protein
STRINGGRMZM2G057408_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]