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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G218500.1.p |
Common Name | Sb10g026450, SORBIDRAFT_10g026450 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 288aa MW: 31019.4 Da PI: 5.1035 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G218500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 52.4 | 1.2e-16 | 123 | 177 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
e kr rr+ +NRe+ArrsR+RK+a++ eLe v+ L++eN +L ++l+e +++ +
Sobic.010G218500.1.p 123 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVERLKGENATLFQRLSEANQQFS 177
579*****************************************99988887755 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MKKCASELEL EAFIRESGDD DARAAAAGRS NHGCGGPGEP GGSAVVFSPG VGFAESNTMD 60 DSSWWYGSVR TPNPVMSRTA SISASLEATT SANHALESES DSDSESLYEV EGVPYERGNK 120 SVETKRIRRM VSNRESARRS RRRKQAQLSE LESQVERLKG ENATLFQRLS EANQQFSTAV 180 TDNRILKSDV EALRVKVKMA EDMVARSAIS CGLGDLGLAP YLNSRKMCQA LNMLTTTGLD 240 LLGSDAFRGP TTAPQVQNSP VQSTASLENL DNRKSNEVTS CAADIWP*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 137 | 144 | RRSRRRKQ |
2 | 139 | 144 | SRRRKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT061821 | 0.0 | BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds. |
GenBank | EU966841 | 0.0 | EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds. |
Publications
? help Back to Top |
- Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] - Liu C,Wu Y,Wang X
bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]
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