PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G207500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 320aa    MW: 34605.7 Da    PI: 6.1345
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G207500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072562892154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Sobic.010G207500.1.p 256 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289
                           569*****************************87 PP
2ELK301.1e-10210231122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+ +L+++++E++
  Sobic.010G207500.1.p 210 ELKHELKQGYRDKLVDIREEIL 231
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194488IPR005540KNOX1
PfamPF037901.5E-164784IPR005540KNOX1
SMARTSM012561.6E-2599154IPR005541KNOX2
PfamPF037919.0E-17107153IPR005541KNOX2
PROSITE profilePS5121310.196210230IPR005539ELK domain
SMARTSM011880.0011210231IPR005539ELK domain
PfamPF037893.6E-5210231IPR005539ELK domain
PROSITE profilePS5007111.58230293IPR001356Homeobox domain
SMARTSM003894.0E-10232297IPR001356Homeobox domain
SuperFamilySSF466891.07E-15232297IPR009057Homeodomain-like
CDDcd000863.79E-11233294No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24237294IPR009057Homeodomain-like
PfamPF059203.4E-18250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFNYHDHAL AMDPAAVGAA AANPSFVSGG GGGGGVAGGG PGWEREKAAI AAHPLYERLL  60
EAHVACLRVA TPVDQLPRID AQIAARPPPM AAAAAAAAAG GAHSGGEELD LFMTHYVLLL  120
CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NQVDSESNMF  180
DGNEGSDGMG FGPLMLTEGE RSLVERVRQE LKHELKQGYR DKLVDIREEI LRKRRAGKLP  240
GDTASTLKAW WQAHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHNNPASSSS  300
DKSKRKRSTA GDGNAEQSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286306RKRNWHNNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.46980.0leaf| ovary| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G207500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304515.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-180KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A194YKK60.0A0A194YKK6_SORBI; Uncharacterized protein
STRINGSb10g025440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-142KNOTTED1-like homeobox gene 3