PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G200400.1.p
Common NameSb0239s002010, SORBIDRAFT_0239s002010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 340aa    MW: 34451.2 Da    PI: 8.9181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G200400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-093280255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GV ++     +vAeI+d         + ++lg++ t+eeAa a++aa + ++g
  Sobic.010G200400.1.p 32 RYRGVMRR--GDMYVAEIMDaA-----GlRPVWLGSYATPEEAAYAYDAATRIMHG 80
                          69999543..457*******33.....38*********************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.592188IPR001471AP2/ERF domain
SMARTSM003807.4E-153294IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-123288IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-173289IPR001471AP2/ERF domain
PfamPF008473.1E-43276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQGGVIELAV QAAAAARAER GTRGAARLPA RRYRGVMRRG DMYVAEIMDA AGLRPVWLGS  60
YATPEEAAYA YDAATRIMHG NKAKPNFPEP PAPAPAAGRG GGALAAAHAG VLPLVGHARM  120
RGPLLGQQPA PPHQASAALV GHARMRAPLL DQQPAAGGGG GVPAAHAGVL PLVGHARMRA  180
PLFGQQPAPP QGPAAPHAPP ASHFLAPPVP YHCGAAPAFS QFLYRPASGP AFAAAGGSNG  240
AGFYGMAPMI GPEPELLMLN YAAISAMSSS GKKNKAVADA VIIIESDSDG EAVVEDNFSA  300
VDDGGASTSS AARPAVPPLR LKDLMEAEVV RRSADEEAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G200400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660985.12e-50ethylene-responsive transcription factor 7
TrEMBLA0A194YKF50.0A0A194YKF5_SORBI; Uncharacterized protein
STRINGSb0239s002010.11e-165(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-11ERF domain protein 12