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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G200300.1.p | ||||||||
Common Name | Sb0239s002020, SORBIDRAFT_0239s002020, SORBI_K025000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 40842.5 Da PI: 12.036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.6 | 1.8e-09 | 127 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GV+ ++++r+ + I+ + + +lg++ t+eeAa a +aa++ +g Sobic.010G200300.1.p 127 KYRGVH--HRKNRYCSVIWNiH-----TrRLLWLGSYKTPEEAAYAWDAAARLTRG 175 8****5..5579*****99955.....35*********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-16 | 126 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-12 | 127 | 183 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.6E-11 | 127 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.669 | 127 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MQAKPRRTLS RRAAPVVLRS YTIPWLADAA GRPLAGGALN RWRARRVASE HSPPNAPRAR 60 GHNEARNARK KGKLAGRNAR VKHVSEGASS DRARMQGGAI VEFARRAAAL ARLEWAARVA 120 ARRPVRKYRG VHHRKNRYCS VIWNIHTRRL LWLGSYKTPE EAAYAWDAAA RLTRGHWAKT 180 NFPEPAWARA VVPAPEVSTE LVLALPTPAA APKRRDPAAA VAAQVSFDNW LLSSSAARPP 240 FSHLAGPTTA AAANNGGAAV VNPSNPGTYV LTTQNVQMPP TNPASTAVSS SSEPVVLASQ 300 FLSAAAPTQH RELPVSQASV SDLAVVGDNF TYDGAASSSS APPPVPRLAL DLLLQLLGRG 360 LAAARVGRSK ERQKLPQVPT GC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G200300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305581.1 | 0.0 | dehydration-responsive element-binding protein 1J | ||||
TrEMBL | C6JSB5 | 0.0 | C6JSB5_SORBI; Uncharacterized protein | ||||
STRING | Sb0239s002020.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17311 | 6 | 10 | Representative plant | OGRP17377 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-06 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G200300.1.p |
Entrez Gene | 8155363 |