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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G200200.1.p | ||||||||
Common Name | Sb10g024870, SORBIDRAFT_10g024870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 22427.3 Da PI: 10.9177 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.7 | 1.9e-10 | 35 | 83 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++y+GV ++ +vAeI+d + ++lg++ t+eeAa a++aa++ + Sobic.010G200200.1.p 35 PRYRGVMRR--GDMYVAEIMDaA-----GlRPVWLGSYATPEEAAYAYDAAARIVH 83 6899**543..457*******33.....38*********************98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.854 | 22 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-5 | 35 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-13 | 36 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-14 | 36 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MQGGVIELAW QAAAAASWAE RGTRGVASRR LPVRPRYRGV MRRGDMYVAE IMDAAGLRPV 60 WLGSYATPEE AAYAYDAAAR IVHGDKAKPN FPEPPVTAQV AGGGGGGVPA AHAGVLPPLA 120 GHARVRAPLN GQQPAPPQAF YVQQAAAAST QHRKLPVSQA SVSDQAVVGD NFTDDGASSS 180 APARVLQCHG SPAPSRSAWS RRPGCGAVRR QKPRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G200200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437322.2 | 1e-117 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A1W0VTX7 | 1e-150 | A0A1W0VTX7_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Sb10g024870.1 | 1e-150 | (Sorghum bicolor) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G200200.1.p |
Entrez Gene | 8067685 |