PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G200100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 311aa    MW: 32969.4 Da    PI: 10.2041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G200100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.5e-094289254
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          +y+GV+  ++ +r+ + I+  + +   r+  +lg++ t+eeAa a +aa++  +
  Sobic.010G200100.2.p 42 KYRGVH--HRENRYCSVIWNiY-T---RRLLWLGSYKTPEEAAYAWDAAARLTR 89
                          8****5..5579*******955.3...4*********************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-1441100IPR001471AP2/ERF domain
SMARTSM003803.1E-842105IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-94299IPR016177DNA-binding domain
PROSITE profilePS5103213.4194299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQGGGNIIVE FARRAAALAR FEWAARVAAR RQENLARRPV RKYRGVHHRE NRYCSVIWNI  60
YTRRLLWLGS YKTPEEAAYA WDAAARLTRG RHWAKTNFPE PAAWAWAWAW AVPAPEVVSP  120
AELVLALPMP ATAPARRRDD QAAAVAAQVS FDNWLLSSSA AAAEPLHRLQ GAPAVVLPDQ  180
QQLTAAALPP FTQFFHLSGP AAAAAANNGG GAVVNPSNPG AYVLTTQNVK MLPTNPATTA  240
LSGGAAPTHH RELPVSQASV SDLAVVEDNF TYDGTSTSAA PPPVPPLTPK DLLLQIGLPA  300
AGRGGPGGAQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G200100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304198.11e-155ethylene-responsive transcription factor ERF037-like
TrEMBLA0A1W0VU070.0A0A1W0VU07_SORBI; Uncharacterized protein
STRINGSb0239s002020.11e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610
Representative plantOGRP1737723