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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G199000.1.p | ||||||||
Common Name | Sb10g024770, SORBIDRAFT_10g024770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 199aa MW: 20394.4 Da PI: 8.499 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28 | 4.6e-09 | 92 | 143 | 3 | 54 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + +++rr ++NRe+Arr R+R++ +++eL +v++L a N +L+ el++ Sobic.010G199000.1.p 92 DERKARRQASNRESARRARARRRGQLDELSSRVAALRAANARLAVELNRVAA 143 66899******************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.1E-4 | 90 | 154 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-7 | 90 | 140 | No hit | No description |
PROSITE profile | PS50217 | 10.611 | 92 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-6 | 93 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.38E-6 | 94 | 140 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 97 | 112 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MQRDDIATLV CQCHTLGAAA AAADFASFYM LQHGHGSLAH EPSYSYPPGT ADGSWCAYGG 60 AGHGTGASAG AGASMGGAGE QLEQQQAGAA RDERKARRQA SNRESARRAR ARRRGQLDEL 120 SSRVAALRAA NARLAVELNR VAAARAREAR ENARLSAEAG ALRERLAAAE AAAAVAAGAR 180 DAAEKGDEEA ATPAAELR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G199000.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437319.2 | 1e-133 | transcription factor RF2b | ||||
TrEMBL | A0A194YKE5 | 1e-131 | A0A194YKE5_SORBI; Uncharacterized protein | ||||
STRING | Sb10g024770.1 | 2e-75 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17736 | 8 | 11 | Representative plant | OGRP20023 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G199000.1.p |
Entrez Gene | 8067679 |