PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G198200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 409aa    MW: 44473.7 Da    PI: 9.4645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G198200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29e-11211191298
                           HTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3  12 ksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           +++ l++p +fa++          +  ++    + l ++ g++W+ +l+         +s++  l++ W eF+ a+g+ +g +vvF+l+
  Sobic.010G198200.1.p  21 SLHHLRVPAQFAAQLvgeegtatgD-GSRAAAVVLLVSPFGKVWRAELRRaggggaGSSSSSWQLGGAWAEFAAAHGIGAGWSVVFRLE 108
                           456699******9999998888852.344667899999**********88888885444455889**********************99 PP

                           SSSEE..EEEEE- CS
                    B3  86 grsefelvvkvfr 98 
                           +r  +  +v++f+
  Sobic.010G198200.1.p 109 RRGVA--TVRAFD 119
                           87666..788776 PP
2B351.22.2e-161462271195
                           HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +  +++p kf++eh  g+  ++++ ++ ++ g+ W v+l  ++++++++l++GW++F +a++L eg +++F++++++ f  +v 
  Sobic.010G198200.1.p 146 EDLEKMRIPDKFVQEHlTGSWSSTQKAMVFSPLGKFWHVEL--DRGQSGVLLGDGWSQFLSAHDLSEGNILLFRYEDNMVF--TVE 227
                           4456799**********555567789***************..********************************998988..555 PP
3B342.41.2e-13318398587
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ++s+ lk+ +++l  +f+++ g+ +++++tl+    + rsW+v +  r+  +  y+ + G k+F+++n+LkegD ++F+++++
  Sobic.010G198200.1.p 318 RVTSNDLKR-LFSLKGSFCSSVGLLEACEITLKTSVGNTRSWSVCF--RNAINYgYLSGPGLKRFCSENNLKEGDCCTFRVIET 398
                           556666666.59*************999766666666669****99..66555559999*********************7764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-139123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.33410121IPR003340B3 DNA binding domain
SMARTSM010191.5E-512121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1315123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-817119No hitNo description
PfamPF023621.9E-820120IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-18135237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-19135232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.028136232IPR003340B3 DNA binding domain
CDDcd100172.70E-14137229No hitNo description
SMARTSM010192.1E-11139232IPR003340B3 DNA binding domain
PfamPF023621.9E-13145228IPR003340B3 DNA binding domain
CDDcd100175.28E-9313405No hitNo description
Gene3DG3DSA:2.40.330.101.7E-15313406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-13313406IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.079314408IPR003340B3 DNA binding domain
PfamPF023621.6E-10319398IPR003340B3 DNA binding domain
PROSITE profilePS508638.91345408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSPSVHRARR KYAAALLSPS SLHHLRVPAQ FAAQLVGEEG TATGDGSRAA AVVLLVSPFG  60
KVWRAELRRA GGGGAGSSSS SWQLGGAWAE FAAAHGIGAG WSVVFRLERR GVATVRAFDA  120
AGCLARFCTP HAGKNRPRFM RVLHTEDLEK MRIPDKFVQE HLTGSWSSTQ KAMVFSPLGK  180
FWHVELDRGQ SGVLLGDGWS QFLSAHDLSE GNILLFRYED NMVFTVEAFL QNGYSKEHGA  240
AAADMTDDLI VTGPSTVPQQ GDKELGVSPV KKKKKTRNES TCVDVYHEKT NLSPISAKKD  300
LSQNKLVCAV PCHSLTKRVT SNDLKRLFSL KGSFCSSVGL LEACEITLKT SVGNTRSWSV  360
CFRNAINYGY LSGPGLKRFC SENNLKEGDC CTFRVIETTV WHVTIMSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G198200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0803201e-134GU080320.1 Saccharum hybrid cultivar R570 clone BAC 249C12, partial sequence.
GenBankKF1847561e-134KF184756.1 Saccharum hybrid cultivar R570 clone BAC 249C12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305580.10.0putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-138Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A194YKE10.0A0A194YKE1_SORBI; Uncharacterized protein
STRINGPavir.Da00487.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Representative plantOGRP10106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.14e-14B3 family protein