PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G194900.2.p
Common NameSb10g024430, SORBIDRAFT_10g024430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 305aa    MW: 32766.1 Da    PI: 4.3804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G194900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.81e-12144197457
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           +k+ +r ++NR +A +sR+RKk +i+ Le+k+k Leae ++L   l+ +  e  
  Sobic.010G194900.2.p 144 SKKKKRQMRNRDSAMKSRERKKSYIKDLETKSKYLEAECRRLSYALQCYAAENM 197
                           799*************************************99988877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-13140204No hitNo description
SMARTSM003382.9E-6141205IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.841143206IPR004827Basic-leucine zipper domain
PfamPF001701.4E-10145202IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-11145203No hitNo description
CDDcd147042.89E-15146197No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDIDLFADID LDALLASFSG EPAAVSDLIV PSPPPPAPAA HDAAEAGSPE SVTSRANPAG  60
EVGLSEIERF LMQEGEAEAE LGGEVEGISV DQFFDALYDG GEGKDEGEAE AGASTDADSG  120
RDEVVEVVTP EAETVEVDGD DPVSKKKKRQ MRNRDSAMKS RERKKSYIKD LETKSKYLEA  180
ECRRLSYALQ CYAAENMVLR QSLMKDRPVG APTAMQESAV LTETLPLVSL LWLVSIVCLF  240
LMPVLPNRSP AAPSSGGRDL VMAAGKTSSE TPEILELILH GRRCKSTRAR IKLYNLPFHP  300
VIAC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.6800.0ovary| pollen| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G194900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864640.0BT086464.1 Zea mays full-length cDNA clone ZM_BFc0169L15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437297.10.0bZIP transcription factor 50
SwissprotQ69XV01e-102BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLA0A1W0VTV90.0A0A1W0VTV9_SORBI; Uncharacterized protein
STRINGSb10g024430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Representative plantOGRP54681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.12e-15basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]