PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G193800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C3H | ||||||||
Protein Properties | Length: 238aa MW: 24490.9 Da PI: 9.6719 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.5e-07 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ Sobic.010G193800.2.p 32 KTRMCNKYNTAEGCKWGSKCHFAHGE 57 89**********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.7e-12 | 203 | 228 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ Sobic.010G193800.2.p 203 FKTKLCENFNK-GSCTFGDRCHFAHGE 228 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 26 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-8 | 30 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.558 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.89E-15 | 101 | 172 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.8E-11 | 102 | 172 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.2 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.4E-16 | 103 | 171 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.40E-14 | 105 | 167 | No hit | No description |
Pfam | PF00013 | 1.1E-11 | 105 | 168 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-17 | 200 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 202 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-9 | 202 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL 60 GKPLQMDNSM GAPPPMGPGP NGHFMPPPMP HLDMVPPSTF GASATAKISV DASLAGAIIG 120 KGGANTKHIS RVTGAKLAIR DNEADPNHKN IELEGTFDQI KHASAMVTEL IVRISGKAPG 180 PQAKNNPGGR GPGSHAGGPG SNFKTKLCEN FNKGSCTFGD RCHFAHGESE LRKPAAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.1446 | 0.0 | callus| leaf| pollen| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G193800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034266 | 0.0 | BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds. | |||
GenBank | BT084833 | 0.0 | BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305248.1 | 1e-171 | zinc finger CCCH domain-containing protein 44-like isoform X1 | ||||
Refseq | XP_021305249.1 | 1e-172 | zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q69XQ3 | 1e-127 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A194YK93 | 1e-170 | A0A194YK93_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A194YL98 | 1e-170 | A0A194YL98_SORBI; Uncharacterized protein | ||||
STRING | Sb10g024330.1 | 1e-171 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G193800.2.p |