PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G192432.1.p
Common NameSb10g024190, SORBIDRAFT_10g024190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 312aa    MW: 33413.8 Da    PI: 10.0824
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G192432.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.5e-13148190544
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                           k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e+++
  Sobic.010G192432.1.p 148 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAQLEQEMQM 190
                           7789***********************9555599999999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-9144190No hitNo description
SMARTSM003387.1E-5144197IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.714146189IPR004827Basic-leucine zipper domain
PfamPF001701.1E-10148191IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-8148183No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
PfamPF141443.3E-25227299IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAYPSTSGMV QASSSLHGSM RRDPEGYDMS SDLDQALLLY FDGQQAKTSI QEQQPQTLNI  60
FPSQPMHHIE PSPKGSMASS SVVAAQVAAA PSKNSQAPSL MGGGGPLAAA GKSSKAAIKR  120
EGGTAGGKHG AVGASSSDQE GPRTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLESGRIR  180
LAQLEQEMQM ARTHQGALWG AGTLSPDAAL FNLEYERWLG EHSKVVARLR AAAEEHHRPD  240
GELRAYVDEA AAHYGALMGH KARVAGADPL HLLSGLWKGA AERCFLWIGG FRPSELVKVP  300
TSTTLKFIIC R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.117660.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G192432.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438679.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T211e-126TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A1W0VTU90.0A0A1W0VTU9_SORBI; Uncharacterized protein
STRINGSb10g024190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Representative plantOGRP1699633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-60bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]