PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G192200.1.p
Common NameSb10g024180, SORBIDRAFT_10g024180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 669aa    MW: 72765.1 Da    PI: 7.05
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G192200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27177230155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W  eLH++Fv+a++q+ G ++A+Pk+ile+m+v+gLt e+v+SHLQkYR+
  Sobic.010G192200.1.p 177 KQRVQWCGELHQKFVQAINQI-GMDRAVPKKILEVMNVEGLTKENVASHLQKYRI 230
                           79*******************.********************************7 PP
2Response_reg59.42e-20121241108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTT CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg..mdGlellkeireeepklpiivvtahge 82 
                           vl v+ +++ r++l++ l+  +y +++ +++++ al++l+e++     +Dl++  + mp+  mdG++ll+ i  e  +lp+i+++a++e
  Sobic.010G192200.1.p  12 VLAVEHDRVCRKVLERQLQYCNY-NATMVTNAQTALDMLRERKeygnqFDLVISNVVMPKpnMDGFKLLELIGLEM-DLPVILLSANSE 98 
                           7899*******************.***************999999**************999**********6644.8*********** PP

                           HHHHHHHHHTTESEEEESS--HHHHH CS
          Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                            +++ + +k Ga ++ +Kp+  e+l+
  Sobic.010G192200.1.p  99 TQTIMKGIKHGACEYMVKPVRLEQLR 124
                           ***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.4E-289133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-339137No hitNo description
SMARTSM004482.1E-2210127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.27611131IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-1712124IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.09E-2013124No hitNo description
PROSITE profilePS512949.501174233IPR017930Myb domain
SuperFamilySSF466892.87E-18174234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27175235IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-24177230IPR006447Myb domain, plants
PfamPF002491.8E-5180229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAADTFPAGL RVLAVEHDRV CRKVLERQLQ YCNYNATMVT NAQTALDMLR ERKEYGNQFD  60
LVISNVVMPK PNMDGFKLLE LIGLEMDLPV ILLSANSETQ TIMKGIKHGA CEYMVKPVRL  120
EQLRGIWTHV VKNSKTDHAI RKLPCGDGDK VKNYSRKNKM VVDVADDDKD NTSTQKKQRV  180
QWCGELHQKF VQAINQIGMD RAVPKKILEV MNVEGLTKEN VASHLQKYRI YLRKLSEGTL  240
RNYNPFADET EALWRNKNVP FFIGSPSSSN HFAKMNSLSA IGTQALLPTE SVQVMSSQKN  300
LGIPQPNMKP VGHSIHLPKN VVPMPVQDIN RFISPGYAPI SSGGLPGAIQ CFPSGPSGSS  360
FANSSNSVVL NTSKPFSVDS SGTTFANLSN DSPPLTSNMS FSSSHSCSSY ASILRGMILG  420
SIRGIPFEDI SDGEMLAPSA HLPLQSPDLV TQPSVQLQSC SAGQFNKVAS EVHQIAGPSN  480
SWKAAAPSRF SDLGHNVGMS EDPSQGNIFK INQLSRFAGS SGQIPTFRNE YEKKFAGITG  540
NSVPMVGFKE QAAACGFGNN THSTATLIDN SALASSSNTI PDLQIDNSAI PTQVLNGGGA  600
SGNLHVGSTV NQQAVRDQLN NINKFLMGTS ETQNEESDDL DYILAYFNQQ DFVNNGDSFI  660
DGDREFAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21173236164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G192200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305575.10.0two-component response regulator ORR25
TrEMBLA0A194YK590.0A0A194YK59_SORBI; Uncharacterized protein
STRINGSb10g024180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Representative plantOGRP1239536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.13e-77response regulator 10