PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G191100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 353aa    MW: 36712.3 Da    PI: 9.1945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G191100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09183230455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Sobic.010G191100.1.p 183 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 230
                           8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.48E-10177234No hitNo description
SuperFamilySSF474593.14E-15177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRHASPPQEL PAAAAGGEIQ AALSPATASS SAARARGGGG GGGGSFTALL GLPTSQAMEL  60
LLPRTAPPPA LAPSPAPAAA APAPTFPSDP HLVDRAARFS TFAPPSPSPS SPSPAPPPPP  120
PPAAANAGKR KAEPVDRASK GKAAKKGKTA AAEEKPTGGD GDGDDEKPAY VHVRARRGQA  180
TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL  240
AAVNPRVDFG GLDSFLTTEC GRIAGFNCKN GIDLEQVTWP EMGVHGTRQL MQLQQHFWHG  300
DLAHPHQVAS QWEKRGDGHP PVFGNPSPSL FGYDLTSSGT QQTPASKLKT EL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G191100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438674.20.0transcription factor bHLH48 isoform X2
SwissprotQ8VZ028e-66BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A194YK790.0A0A194YK79_SORBI; Uncharacterized protein
STRINGGRMZM2G378653_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-52bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]