PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G181200.1.p
Common NameSb10g023270, SORBIDRAFT_10g023270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 663aa    MW: 75579.1 Da    PI: 8.1293
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G181200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.1e-2284175290
                  FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                           fYn+YA + GF +r+++s++++r+g    ++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H
  Sobic.010G181200.1.p  84 FYNAYALRFGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKPVEpSNKKKRKRLSIRDGCPAMMEVVRRGPDKWVITKLVLEHTH 172
                           9**************9999886665216789**********99998887899999********************************** PP

                  FAR1  88 ela 90 
                            ++
  Sobic.010G181200.1.p 173 VIV 175
                           875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2084175IPR004330FAR1 DNA binding domain
PfamPF105513.6E-25262353IPR018289MULE transposase domain
PROSITE profilePS509669.198545577IPR007527Zinc finger, SWIM-type
PfamPF044345.2E-7547575IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEYSSSEDEE LIGDFIDAEG NTATENIDQG TGMMASQIHD DDPSVGSMPP VIGNELLMAA  60
DVVGKNDEPR MGMEFESDAA ARAFYNAYAL RFGFGIRVAR SRSERRKGVE VLVMKRFVCL  120
KEGHHKKKPV EPSNKKKRKR LSIRDGCPAM MEVVRRGPDK WVITKLVLEH THVIVSADRA  180
REVQLRRLSG KFQEHENQLQ ELRRNVFGDT NAQGLFNYFK KMQSENSSFF FSTQVDSKNC  240
VSNAVWVDAR ARMAYTYFGD AVYFDTTYSQ NENMLPFAAF TGVNHHGDTV VFGCALILDR  300
TESSYSWIFE TWLTAMDDRL PFSFTTDEGK GIAAAVAKVF PQCFHRLCRW RILSRCKKRL  360
TDVCTRFPGL HDELKRCVNG CDTVAVFDMF WGSILDKYGL KDDNWLQSLY EIRDRWVPAY  420
LTSSFFAELS LTHRVETVSR FYRNNFSSRV SLNTFISRFD QYIDGLYASE AQKDITSFSP  480
EQFLKTETVL EKQARSIYTR AAFETFQLEL VEAMQHYAVK VQDGSYMKYY VERNGDPPTR  540
HTVFYNVAEK KAWCECCRFA FSAILCRHVL SVFLLVGVIM LPEPCITKRW TKKAKTGPEL  600
FGLNVENGSG SADSVASRYN DLVRDAMRCA EKGAVSAGAF RVAKEVLHKA FMEIRGLGEK  660
LR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125139KKKPVEPSNKKKRKR
2126138KKPVEPSNKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.200240.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G181200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659732.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLC5Z5K00.0C5Z5K0_SORBI; Uncharacterized protein
STRINGSb10g023270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-119FAR1-related sequence 5