PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G168500.2.p
Common NameSb10g022130, SORBIDRAFT_10g022130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 477aa    MW: 52029.4 Da    PI: 6.9614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G168500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.2e-33672261128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                           lp+G++F+Ptd+el+ e+L++kv++ +        ++++   i+   +i++++P++Lp  ++++ ++ +fF++ +k+y+tg+rk+r+  
  Sobic.010G168500.2.p  67 LPAGVKFDPTDQELI-EHLQAKVRAASaaapshplIDEFIPtIEGEdGICYTHPERLP-GLTKDGRSRHFFHRPSKAYTTGTRKRRKiq 153
                           799************.99******999777775553333333776646**********.556678999******************88* PP

                   NAM  78 .....................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                 ++ +W++tgk+++v++  g++ g+kk+Lv+y   g+++k+ kt+Wvmh+y+l
  Sobic.010G168500.2.p 154 praaesssssalpaqqqqqqqRSETRWHKTGKTRPVVV-AGQQRGCKKILVLYtnFGKHRKPDKTNWVMHQYHL 226
                           ****************9998755789************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3560245IPR003441NAC domain
PROSITE profilePS5100529.64367245IPR003441NAC domain
PfamPF023651.2E-1568226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGSWQQGELQ GAAMDGAAAA AAATGSGGGG HRRMDSRIEE HGKYLSESSC CSQCGHKTER  60
KLDWVGLPAG VKFDPTDQEL IEHLQAKVRA ASAAAPSHPL IDEFIPTIEG EDGICYTHPE  120
RLPGLTKDGR SRHFFHRPSK AYTTGTRKRR KIQPRAAESS SSSALPAQQQ QQQQRSETRW  180
HKTGKTRPVV VAGQQRGCKK ILVLYTNFGK HRKPDKTNWV MHQYHLGDKE EEREGELVVS  240
KIFYQTQPRQ CGVAAEPAVA AAASSDTVEE AAADPPLPPD GMVVPPPDVA GAFHGAAGID  300
EFNFAQFRSS FEECTQVDVG ASSVQISVRD DEEVHAGHPN LHQEHNLHQH QFGNQEQRQR  360
MAAAAAAFHI NTPTEPITTM ITSSTVVHHG SAVLQHPDAY GHGTTYRRHQ QDDEQLHQQP  420
QSFDGRSTAG LEAVIMGCTS SRRSKRGEAS GSGGNKESTG WPYQSFWPSD SQDHHG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G168500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697750.0EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304611.10.0uncharacterized protein LOC8061978
SwissprotQ9M0F81e-124NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1W0VTG70.0A0A1W0VTG7_SORBI; Uncharacterized protein
STRINGSb10g022130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]