PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G164400.1.p
Common NameSb10g021800, SORBIDRAFT_10g021800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 280aa    MW: 29070.5 Da    PI: 7.7247
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G164400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33131042102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k+y ++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+
  Sobic.010G164400.1.p  13 FVWKTYMMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQ 92 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll++i r+ s
  Sobic.010G164400.1.p  93 THLLRNIVRRGS 104
                           *********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-509102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2813102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAAGAGGGAA APFVWKTYMM VEDPGTDGVI GWGKGNNSFV VADPFVFSQT LLPAHFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFAHASFLR GQTHLLRNIV RRGSSGSAGG GGGGGGGKRK  120
DAPASVNPVE PSAEDIAMVA TEVVRLKQEQ RTIDDRVAAM WRRVQETERR PKQMLAFLLK  180
VVGDRDRLHR LVGDGGTAAA PGPDNNGFAS GGAAAAEEGG EKRARLLLDG DNMVALGPEA  240
VDFAGFYSGG GVFGFGDVAV DAAAGSGGGG CSFAFGGGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-25510712125Heat shock factor protein 1
5d5u_B3e-25110212129Heat shock factor protein 1
5d5v_B3e-25110212129Heat shock factor protein 1
5d5v_D3e-25110212129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.117980.0pollen
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G164400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597411e-146EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438552.10.0heat stress transcription factor C-2b isoform X2
SwissprotQ0DBL61e-123HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLC5Z4I90.0C5Z4I9_SORBI; Uncharacterized protein
STRINGSb10g021800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-57heat shock transcription factor C1