PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G163900.1.p
Common NameSb10g021750, SORBIDRAFT_10g021750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 357aa    MW: 37659.6 Da    PI: 8.0802
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G163900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.11.2e-64131612148
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasa 88 
                           g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kpl  e+++ +g+sas 
  Sobic.010G163900.1.p  13 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPLatERPDPIGRSASP 101
                           789************************************************************************999*********** PP

                DUF822  89 spesslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                           sp+ss+q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+p+l++ls++ss
  Sobic.010G163900.1.p 102 SPCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfmggvegNSLIPWLKNLSSSSS 161
                           *******........*************************999889****************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-6913157IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSGAGGAAA GIGGTRVPTW RERENNRRRE RRRRAIAAKI FAGLRAYGNY NLPKHCDNNE  60
VLKALCNEAG WTVEPDGTTY RKGCKPLATE RPDPIGRSAS PSPCSSYQPS PRASYNPSPA  120
SSSFPSSGSS SHITLGGNNF MGGVEGNSLI PWLKNLSSSS SFASSSKFPQ LHHLYFNGGS  180
ISAPVTPPSS SPTRTPRIKT DWENPSVQPP WAGANYASLP NSQPPSPGHH QVAPDPAWLA  240
GFQISSAGPS SPTYSLVAPN PFGIFKETIA STSRMCTPGQ SGTCSPVMGG VPIHHDVQMV  300
DGAPDDFAFG SSSNGNNESP GLVKAWEGER IHEECASDEH ELELTLGSSK TRADPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A8e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B8e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C8e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D8e-251687372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.81270.0root
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G163900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626360.0EU962636.1 Zea mays clone 244325 brassinazole-resistant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437132.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLC5Z4I10.0C5Z4I1_SORBI; Uncharacterized protein
STRINGSb10g021750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.19e-61BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]