PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G152700.1.p
Common NameSb10g020490, SORBIDRAFT_10g020490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 381aa    MW: 40321.9 Da    PI: 7.9346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G152700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13110160255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Sobic.010G152700.1.p 110 KTSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 160
                           799*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17109185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-11110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-14110164No hitNo description
SMARTSM003531.6E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAEALCDQLF SDVDGELMRQ HTSDTDDLLG ILEAWEDCVT GGGATTPRGA DVLHQSASDA  60
AATPKAAAAK RRRQGCREED GTAVPAPKRQ RCSPVSSDAA AASEDGAANK TSHITVERNR  120
RKQMNEHLAV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVLQSLEAKK QRKAYTEQVL  180
SPRPPACCSP RPPLSPRPPL PPLKSTPPIS PRPAVPISPR TPPPAPSSPY KPRRQPISVP  240
LPPPGSSAYA SPAMTPTREP AAASYLPSLD TVAADLCAYA ATNKQLQPAL PAAAGGVVVL  300
PDVKVEFSGA NLVVKTVSHR APGQTVKVIA ALEGRSLEIL DAKINTVNDT AVNSYTIKIG  360
IECELSAEEL VQEIQQAFSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G152700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437061.10.0transcription factor SPEECHLESS
TrEMBLC5Z3L80.0C5Z3L8_SORBI; Uncharacterized protein
STRINGSb10g020490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-36bHLH family protein