PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sobic.010G151325.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 439aa MW: 51106.9 Da PI: 10.2806

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G151325.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.1e-17	29	106	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF +r+ +s+ + +n+ +t+ +fvCs+eg +++ + + rtgCka+++++++ d+ w+++++e eHnH Sobic.010G151325.2.p 29 DFYNIYSWEIGFGIRTGRSRVN-NNKYTTRLDFVCSCEGLCPNTSAA---------SYRTGCKAMIRLHRTLDHGWVISRFEREHNHL 106 6***************9988.8888********99887655.........9****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-13	29	106	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-26	229	321	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MRTASNRPLE PVFIPVVGME FNLAKEAKDF YNIYSWEIGF GIRTGRSRVN NNKYTTRLDF 60 VCSCEGLCPN TSAASYRTGC KAMIRLHRTL DHGWVISRFE REHNHLCSAT YGQNKHWPSH 120 SDIDPMTKDF VRKLRENNIP IGRVCSILGV HGSDSAIPIT KESVRSLCAS IAQENIKDDI 180 GKTIDLLEQM KNKDLGMEIR FKLDDDGKIK SMLWCTGKNR ADFAKFGDVV TFDTTYRTNL 240 YNLRFGLFIG VNNHFQSIVF GGVLTNEKVQ DFEWAFSKFS EIMFGKQLQT ILTDQCQAMA 300 AAIKSIFPAA NHRWCRWHVL RKTKQKVGLV YSKKSNFKKE FNKLVTEETN QNRFERKWRQ 360 LMRKYYLIEN QFMNRIFKHR AKWAKPYFMG IFFAGMTSTQ RSESANHMLK QFIQRSAPMH 420 MFVRKFNELQ MDRNESGR*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MRTASNRPLE PVFIPVVGME FNLAKEAKDF YNIYSWEIGF GIRTGRSRVN NNKYTTRLDF  60
VCSCEGLCPN TSAASYRTGC KAMIRLHRTL DHGWVISRFE REHNHLCSAT YGQNKHWPSH  120
SDIDPMTKDF VRKLRENNIP IGRVCSILGV HGSDSAIPIT KESVRSLCAS IAQENIKDDI  180
GKTIDLLEQM KNKDLGMEIR FKLDDDGKIK SMLWCTGKNR ADFAKFGDVV TFDTTYRTNL  240
YNLRFGLFIG VNNHFQSIVF GGVLTNEKVQ DFEWAFSKFS EIMFGKQLQT ILTDQCQAMA  300
AAIKSIFPAA NHRWCRWHVL RKTKQKVGLV YSKKSNFKKE FNKLVTEETN QNRFERKWRQ  360
LMRKYYLIEN QFMNRIFKHR AKWAKPYFMG IFFAGMTSTQ RSESANHMLK QFIQRSAPMH  420
MFVRKFNELQ MDRNESGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G151325.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1W0VT91	0.0	A0A1W0VT91_SORBI; Uncharacterized protein
STRING	Sb08g016320.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-55	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.010G151325.2.p