PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G151325.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 503aa MW: 57936.5 Da PI: 10.2143

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G151325.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55	2.7e-17	93	170	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF +r+ +s+ + +n+ +t+ +fvCs+eg +++ + + rtgCka+++++++ d+ w+++++e eHnH Sobic.010G151325.1.p 93 DFYNIYSWEIGFGIRTGRSRVN-NNKYTTRLDFVCSCEGLCPNTSAA---------SYRTGCKAMIRLHRTLDHGWVISRFEREHNHL 170 6***************9988.8888********99887655.........9****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	93	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-26	293	385	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MELQPSFLIE SFQGNDGMSS PLIAASAANL IYRGQESNGL KRKRAKHGPD SKSSPLEESA 60 ISQAMRTASN RPLEPVFIPV VGMEFNLAKE AKDFYNIYSW EIGFGIRTGR SRVNNNKYTT 120 RLDFVCSCEG LCPNTSAASY RTGCKAMIRL HRTLDHGWVI SRFEREHNHL CSATYGQNKH 180 WPSHSDIDPM TKDFVRKLRE NNIPIGRVCS ILGVHGSDSA IPITKESVRS LCASIAQENI 240 KDDIGKTIDL LEQMKNKDLG MEIRFKLDDD GKIKSMLWCT GKNRADFAKF GDVVTFDTTY 300 RTNLYNLRFG LFIGVNNHFQ SIVFGGVLTN EKVQDFEWAF SKFSEIMFGK QLQTILTDQC 360 QAMAAAIKSI FPAANHRWCR WHVLRKTKQK VGLVYSKKSN FKKEFNKLVT EETNQNRFER 420 KWRQLMRKYY LIENQFMNRI FKHRAKWAKP YFMGIFFAGM TSTQRSESAN HMLKQFIQRS 480 APMHMFVRKF NELQMDRNES GR*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MELQPSFLIE SFQGNDGMSS PLIAASAANL IYRGQESNGL KRKRAKHGPD SKSSPLEESA  60
ISQAMRTASN RPLEPVFIPV VGMEFNLAKE AKDFYNIYSW EIGFGIRTGR SRVNNNKYTT  120
RLDFVCSCEG LCPNTSAASY RTGCKAMIRL HRTLDHGWVI SRFEREHNHL CSATYGQNKH  180
WPSHSDIDPM TKDFVRKLRE NNIPIGRVCS ILGVHGSDSA IPITKESVRS LCASIAQENI  240
KDDIGKTIDL LEQMKNKDLG MEIRFKLDDD GKIKSMLWCT GKNRADFAKF GDVVTFDTTY  300
RTNLYNLRFG LFIGVNNHFQ SIVFGGVLTN EKVQDFEWAF SKFSEIMFGK QLQTILTDQC  360
QAMAAAIKSI FPAANHRWCR WHVLRKTKQK VGLVYSKKSN FKKEFNKLVT EETNQNRFER  420
KWRQLMRKYY LIENQFMNRI FKHRAKWAKP YFMGIFFAGM TSTQRSESAN HMLKQFIQRS  480
APMHMFVRKF NELQMDRNES GR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G151325.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1W0VT91	0.0	A0A1W0VT91_SORBI; Uncharacterized protein
STRING	Sb08g016320.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-55	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.010G151325.1.p