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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.010G123500.2.p |
| Common Name | Sb10g010860, SORBIDRAFT_10g010860 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
CO-like |
| Protein Properties |
Length: 407aa MW: 43706.6 Da PI: 5.0485 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G123500.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.6 | 9e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ ++e++ +C+++ lC +C + H+ Ht++
Sobic.010G123500.2.p 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
6*****************************657888889876 PP
|
| 2 | zf-B_box | 22.3 | 2.7e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+++ ++++ C + lC++C ++H H++++
Sobic.010G123500.2.p 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgssaagHKRQT 89
7*****************************3256677788765 PP
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| 3 | CCT | 64.1 | 4e-22 | 349 | 391 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk
Sobic.010G123500.2.p 349 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKV 391
899**************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60
LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN 120
CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL 180
ATDQTAGSVD SPPDKVPYTP DKDMFSKDSI YEDFCVDDVD LAFENYEELF GTSHIQTEQL 240
FDDAGIDSYF EVKEAPAGNS TEQSKLKQPA NSNAVSADSG MSNPGVKGDS SVCIPLRQAR 300
SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SAITRYKEKK 360
KRRKFDKKIR YASRKARADV RKRVKGRFVK VGEAYDYDPL CQTRSY*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 358 | 362 | KKKRR |
| 2 | 358 | 363 | KKKRRK |
| 3 | 359 | 363 | KKRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962767 | 0.0 | EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G48250.1 | 5e-76 | B-box type zinc finger protein with CCT domain |
