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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G123500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
CO-like |
Protein Properties |
Length: 412aa MW: 44239.2 Da PI: 4.9579 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G123500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.6 | 9.2e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ ++e++ +C+++ lC +C + H+ Ht++
Sobic.010G123500.1.p 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
6*****************************657888889876 PP
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2 | zf-B_box | 22.3 | 2.7e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+++ ++++ C + lC++C ++H H++++
Sobic.010G123500.1.p 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgssaagHKRQT 89
7*****************************3256677788765 PP
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3 | CCT | 64.1 | 4.1e-22 | 354 | 396 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk
Sobic.010G123500.1.p 354 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKV 396
899**************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL 180 ATDQTAGSVD SPPDKDSCVQ VPYTPDKDMF SKDSIYEDFC VDDVDLAFEN YEELFGTSHI 240 QTEQLFDDAG IDSYFEVKEA PAGNSTEQSK LKQPANSNAV SADSGMSNPG VKGDSSVCIP 300 LRQARSSLSL SFSGLTGESS AGDHQDCVVS SLLLMGEPPW QPPGPEGSIA GGSRDSAITR 360 YKEKKKRRKF DKKIRYASRK ARADVRKRVK GRFVKVGEAY DYDPLCQTRS Y*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 363 | 367 | KKKRR |
2 | 363 | 368 | KKKRRK |
3 | 364 | 368 | KKRRK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU962767 | 0.0 | EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G48250.1 | 2e-75 | B-box type zinc finger protein with CCT domain |