PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G116200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 189aa    MW: 22075.7 Da    PI: 9.2157
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.8e-11107154451
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                            +r rr  +NRe+ArrsR RK++++ +L e v  L + N++L ++l++
  Sobic.010G116200.1.p 107 ERRRRRTVSNRESARRSRVRKRKQLTQLWEQVVFLRGDNRDLLDRLNR 154
                           57999**************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-7103168IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.852106169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7106154No hitNo description
PfamPF001705.2E-9106154IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-9108155No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
CDDcd147022.06E-8115155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MHPSEVASVF LPYLPPAATA SICFGIVPHY HTPADDDLHR LLFPCNDDSD LLTLPYTVAS  60
FEYAGGQPLL EHHHHHHHHH HHAVNDKDEG GDDRRLLQHR RQLLAEERRR RRTVSNRESA  120
RRSRVRKRKQ LTQLWEQVVF LRGDNRDLLD RLNRAIRDAD HVLRDNARLS DERAELQRRL  180
HELAGARR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112RRRRRT
2109128RRRTVSNRESARRSRVRKRK
3120126RRSRVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282634e-75KJ728263.1 Zea mays clone pUT6540 bZIP transcription factor (bZIP59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305460.11e-133transcription factor Maf-like
TrEMBLA0A194YII91e-132A0A194YII9_SORBI; Uncharacterized protein
STRINGSi007892m1e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP2000622