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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.010G106601.1.p |
| Common Name | Sb10g009330, SORBIDRAFT_10g009330 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
MYB |
| Protein Properties |
Length: 299aa MW: 31751.8 Da PI: 4.8018 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G106601.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.3 | 4.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv +G +W+ +++ g+ R++k+c++rw +yl
Sobic.010G106601.1.p 14 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+ +E+ l +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
Sobic.010G106601.1.p 71 SDDEERLVIDLHAQLGNR-WSKIAAQLP-GRTDNEIKNHWNTH 111
899***************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGRQPCCDKV GMKKGPWTAE EDQKLVGFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY 60
LRPDLKRGLL SDDEERLVID LHAQLGNRWS KIAAQLPGRT DNEIKNHWNT HIRKKLLRMG 120
IDPVTHLPLQ EPPAPPPPPP PPPEQEPDDQ EEEPQQQEQQ AGKLMQEGGA GEDDVAPMVQ 180
PHETIMAPPP PPTTAASNCG SAAVSSASAG SASVVSPSCS SSSASAPAVT GVEATEWPEP 240
VYLFGMDGIM DAGWAGLFPS TGAGAGGCFG LGGVDPFDQY PGVGVGGAGF DQDDGHWM*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT037537 | 0.0 | BT037537.1 Zea mays full-length cDNA clone ZM_BFb0176M23 mRNA, complete cds. |
| GenBank | EU951873 | 0.0 | EU951873.1 Zea mays clone 1061835 odorant 1 protein mRNA, complete cds. |
| GenBank | JX469945 | 0.0 | JX469945.1 Zea mays subsp. mays clone UT3206 MYB-type transcription factor mRNA, partial cds. |
