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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G090200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MIKC_MADS |
Protein Properties |
Length: 374aa MW: 41278.8 Da PI: 4.7884 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G090200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.4 | 8e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s
Sobic.010G090200.2.p 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFS 58
79********************************************9997 PP
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2 | K-box | 20.2 | 2.4e-08 | 112 | 179 | 10 | 77 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77
+++ e+lqqe++ + +++ L++++R + + + s+ e + e+ L + l+++ ++K+ ll++++
Sobic.010G090200.2.p 112 VNSNVEELQQEIRTYQHQLQVLEEQLRMFEPDPVALASMHEVETCEKFLMDTLTRVEERKKYLLCNHM 179
57899***********************************************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLSHFSGR 60 RRIEDVITRY INLPEHDRGG VVRNREYLIK MLTQLKCEGD IAEQLAPNKG PVNSNVEELQ 120 QEIRTYQHQL QVLEEQLRMF EPDPVALASM HEVETCEKFL MDTLTRVEER KKYLLCNHMG 180 PFEPSPSDMH HVFGLPPPPQ PPAQQQQHEE EPQGDLGVNA FAGDVSSWFA DGLPTSSIFA 240 GPDPILSFRD QVIFDSMRRD PVVGGVDPGI ASMCHVDQQA PSDDWQQAYT SAELLSALIP 300 STPFPLDDQD AMAPVLTSPM AVPPHMHEQV VEAPGNCSNV NVPVDGDCAA TATPAAAPVA 360 PQEHGLPGAV NIG*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6byy_A | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 1e-18 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6c9l_A | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT066884 | 0.0 | BT066884.1 Zea mays full-length cDNA clone ZM_BFb0091A09 mRNA, complete cds. |
GenBank | EU960063 | 0.0 | EU960063.1 Zea mays clone 221530 MADS-box protein AGL66 mRNA, complete cds. |