|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sobic.010G089700.1.p |
Common Name | Sb10g007780, SORBIDRAFT_10g007780 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
Family |
ERF |
Protein Properties |
Length: 368aa MW: 38775.9 Da PI: 6.2326 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G089700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.1 | 5e-19 | 182 | 230 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++GVr+++ +g+WvAeIr p++ r+r +lg+f++ae+Aa a+++a+ +l+g
Sobic.010G089700.1.p 182 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRG 230
8******9.**********955...5*************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY SYPYCSALPQ 60 DSYYLPATSS YTSFPPPPPA PTAATSFSQL PPLPQSSSSY ASPAAASYPT SSSADAASGL 120 AALNHLGPAA QIHQIQAQLL AQHQEQQQQQ RGLLAAAAFL GPRATQPMKH AGAPSASSAK 180 LFRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDSAEDAALA YDKAAFRLRG DAARLNFPSL 240 RRGGVHLAGP LDASVDAKLT AICQGLTTAE PASSKAADTD ASTTATAAPD SPKASASTTT 300 TEGDESVHSA GSPPSSLPAF FQPPPPPQQQ HPEMVSLDFT EAPWDESAAL HLNKYPSWEI 360 DWDSILS*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK365040 | 1e-114 | AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17. |