PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G085700.2.p
Common NameSb10g007420, SORBIDRAFT_10g007420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 308aa    MW: 34987.1 Da    PI: 9.6915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G085700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.7e-12138183247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT +E+ +++++ + +G g+Wk I+r + +++t+ q+ s+ qky
  Sobic.010G085700.2.p 138 RFWTIDEHRQFLRGLHVYGRGNWKNISRDFVTTKTPVQVSSHAQKY 183
                           56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.658132188IPR017930Myb domain
SuperFamilySSF466893.51E-15135188IPR009057Homeodomain-like
SMARTSM007175.7E-8136186IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-14137187IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.2E-9137183IPR009057Homeodomain-like
CDDcd001675.37E-8140184No hitNo description
PfamPF002494.8E-9140183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPKFKGEWS ASEIKMVKSL IARDNTNDNC ASDMNKKQNQ IVDELQAMFR SKEKHQVTNL  60
YTDVKVEMTQ ILQSGNQQVE GSSNLMNQPF GVFVDDPSMG NMEAFDGYKK VEMFRMRNVK  120
ETPQRKPTPR KESQHTRRFW TIDEHRQFLR GLHVYGRGNW KNISRDFVTT KTPVQVSSHA  180
QKYFLRKENG TKKQRYSIND IRLYDFEPLL QTNASAWKGP TFGGGSYNTN HNSFGGHPTS  240
MNNAQAWSPF LYHTGHGSSN NSQIATLAIG QRQEHMGASS SLVAPTMEVD GGNLDWTSYK  300
LGDLDTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G085700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436714.10.0transcription factor DIVARICATA
TrEMBLA0A1W0VS010.0A0A1W0VS01_SORBI; Uncharacterized protein
STRINGSb10g007420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-23MYB family protein