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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G080400.1.p |
Common Name | Sb10g006980, SORBIDRAFT_10g006980 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 239aa MW: 24436.1 Da PI: 4.4727 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G080400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 32 | 80 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
ykGVr ++ +g+Wv+e+r p g+++r++lg++ ta+ Aa+a++aa ++l+g
Sobic.010G080400.1.p 32 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTADAAARAYDAALLCLKG 80
9****998.*******9998...557************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MVKTALVASS NDHAAASAAS AKHGGGGKQR TYKGVRMRSW GSWVSEVRAP GQKTRIWLGS 60 HSTADAAARA YDAALLCLKG SAATADLNFP LRLPFDLPPA AMSPKAIQRV AAAAAAASSS 120 CATPFAPCAE NNSGSSACTD GDATPAWSSS SPASDADVSS PESTVSSESD LSGDAVDYSS 180 LADIDAFFQS PKCMDYALMD PCSAFFAPPA SMAMHDDDGC CWVEDGGIAL WSFSNLDC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004687 | 2e-92 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. |
GenBank | AP014962 | 2e-92 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
GenBank | CP012614 | 2e-92 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |