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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.010G077200.1.p |
| Common Name | Sb10g006690, SB35P03.4, SORBIDRAFT_10g006690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
GRF |
| Protein Properties |
Length: 339aa MW: 35944.3 Da PI: 9.7332 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G077200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 74.7 | 1e-23 | 85 | 128 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+epgrCrRtDGKkWRCsr++ + +k+CE+H+hrg+srsrk++e
Sobic.010G077200.1.p 85 DPEPGRCRRTDGKKWRCSREAHGESKYCEKHIHRGKSRSRKPVE 128
79***************************************998 PP
|
| 2 | QLQ | 59.6 | 9.2e-21 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++
Sobic.010G077200.1.p 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46
5*******************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP 60
PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSREAHGESK YCEKHIHRGK 120
SRSRKPVEVT SPAAAAYRPS ALSISPPRAA DAPPPSLAHP HQHLRHGAAS AAAAARGAPG 180
QATAGALQLH LDASLHAASP PPSYHRYAHS HAHYTPPPSL FPGGGGGYDY GQSKELREAE 240
LRRRHFHALG ADLSLDKPLA ATAAGSAAAE KPLRRFFDEW PRESGDTRPS SWAGAEDATQ 300
LSISIPAASP SDLAASAAAR YHNGEPSGER KTPLLLVP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF466199 | 0.0 | AF466199.1 Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds. |
