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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.010G071700.1.p |
| Common Name | Sb10g006260, SORBIDRAFT_10g006260 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
ERF |
| Protein Properties |
Length: 359aa MW: 39514.1 Da PI: 4.6733 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G071700.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59 | 1.2e-18 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++G+r+++ +g+W+AeIrdp++ r++lg+f ++eeAa+a++a +++++g
Sobic.010G071700.1.p 115 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 164
69*******.**********954...4************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070483 | Biological Process | detection of hypoxia |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MCGGAILSDI IPPPPRRVTA GHLWPESKKP RRGAGAGRRR AGPPVEEEEE EEDFEADFEV 60
FEVESGESEL ESEDEAKPFA APRTRSALPR DGLNTSAVVV DGPAANSVKR KRKNQFRGIR 120
RRPWGKWAAE IRDPRKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDEVSTIPQ 180
KHRAGPTPLK VPEMDFEEKP IIKPAVNNMT NSNAYHYPVV DHNIPEPFMH TQNMSFAPFV 240
NSAAPIQEPF VNLSSDQGSN SFSCSDFSLE NDTRTPDITS VVVGESAFVQ NTGPAVVPPL 300
MGNASVDLTE LDPYMNFLMD SGSEDSINTL LSCDGSQDVV SNMDLWSFDD MPMSAGFY*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 108 | 122 | KRKRKNQFRGIRRRP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
| Publications
? help Back to Top |
- Kim CY, et al.
Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
[PMID:10755311] - Koo SC, et al.
OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
[PMID:19607808] - Iwamoto M,Takano M
Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
Biotechnol. Lett., 2011. 33(1): p. 173-8
[PMID:20872166] - Serra TS, et al.
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
Plant Mol. Biol., 2013. 82(4-5): p. 439-55
[PMID:23703395] - Jisha V, et al.
Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
PLoS ONE, 2015. 10(6): p. e0127831
[PMID:26035591] - Lourenço TF, et al.
The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
Plant Physiol., 2015. 169(3): p. 2275-87
[PMID:26381316]
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