PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G071600.2.p
Common NameSb10g006250, SORBIDRAFT_10g006250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 490aa    MW: 52412.6 Da    PI: 5.0433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G071600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.9e-12331376555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR++i +++  L++l+P++      K +Ka++L + ++Y+k Lq
  Sobic.010G071600.2.p 331 HSIAERLRREKISDRMKSLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 376
                           99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.73E-13324380No hitNo description
SuperFamilySSF474594.45E-17324386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.307326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17328385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9331376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-14332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDFSAGSYFS SWPVNSGSES YSLADGSVES YGGEGSMAPS SYFMTARSDH NLKFSVHEQD  60
STMLPNEQLT YAGAGQTDLL PGDTLSRDKL CENLLELQRL QNNSNLQSNL VAPGVLQHNS  120
TPGVFHPQLN TPGLSELPHA LSSSIDSNGS EVSAFLADVN AVSSAPTLCS AFQNASSFME  180
PVNLEAFSFQ GAQSDSVLNK TSHSNGNISV FDSATLASLH DSKEFITGRL PSFASVKEAN  240
LASSGFKTQK QEQNAMCNVP LPAFTARNQM SVAATQGALI PQKIPSWINE NKSEGPVSHP  300
SDVQTQPNSA GNGVGVKPRV RARRGQATDP HSIAERLRRE KISDRMKSLQ DLVPNSNKAD  360
KASMLDEIID YVKFLQLQVK VLSMSRLGAP GAVLPLLTES QTEGYHGQPL SAPTNTQGLL  420
DALDSEDAFV FEEEVVKLME TSITSAMQYL QNKGLCLMPV ALASAISTQK GVSAAAIPPE  480
RRNKDMLLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.58840.0callus| leaf| ovary| pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G071600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9578570.0EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438003.10.0transcription factor bHLH66 isoform X2
TrEMBLC5Z5Y50.0C5Z5Y5_SORBI; Uncharacterized protein
STRINGSb10g006250.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-59LJRHL1-like 3