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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G056000.1.p |
Common Name | Sb10g004880, SORBIDRAFT_10g004880 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
BBR-BPC |
Protein Properties |
Length: 349aa MW: 38116.3 Da PI: 10.3311 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G056000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 332.5 | 1.1e-101 | 3 | 348 | 2 | 301 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd..................... 57
d+dgs rn+g+y+ k nlglqlmss++ +rd+k + ++ a ++
Sobic.010G056000.1.p 3 DEDGSLGiRNWGFYDTV---KGNLGLQLMSSVPpDRDTKSllpngaflqhHGHHNAPHQL-------Hmqhsqhprgpagggasggmpt 81
45677778******987...************99******77777666653333333333.......02333344669*********** PP
GAGA_bind 58 ......maflqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqleds 122
m+f +++++l++ ++ + ++k+l+ +++ + +++p+g++++s+++++ +++q + e+ql+++
Sobic.010G056000.1.p 82 esqpihMDFSRNEAWLHQ-SHHQRPSEQKVLHSRPIRPAGHaghpghgghpahvghivHHHPTGYGMVSDAQHTlQMMQPQLETQLQEP 169
******************.88889999****99998877667889*************9********9998765166666889999998 PP
GAGA_bind 123 avelreeeklealpieeaaeeake...kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestl 208
+ +ee+ + ie++a +++ kkk++ rq++++pk++k kk+kk +++ ++ + +++ +r++ +kk++++v+ng++lD +t+
Sobic.010G056000.1.p 170 PPC--KEEEAPPPLIEDHAVVSTGppvKKKQRGRQQNRQPKSPKPKKPKK-IAVPLEDGALNGHAPRRRGPKKTVGMVINGIELDLATI 255
876..44445566666666655541112333446788999999999*999.779999******99************************ PP
GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
P+PvCsCtGa++qCY+WG GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkf
Sobic.010G056000.1.p 256 PTPVCSCTGAPQQCYRWGPGGWQSACCTTSISTYPLPMSTKRRGARISGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKF 344
***************************************************************************************** PP
GAGA_bind 298 vtir 301
vtir
Sobic.010G056000.1.p 345 VTIR 348
***8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0050793 | Biological Process | regulation of developmental process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MDDEDGSLGI RNWGFYDTVK GNLGLQLMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60 MQHSQHPRGP AGGGASGGMP TESQPIHMDF SRNEAWLHQS HHQRPSEQKV LHSRPIRPAG 120 HAGHPGHGGH PAHVGHIVHH HPTGYGMVSD AQHTLQMMQP QLETQLQEPP PCKEEEAPPP 180 LIEDHAVVST GPPVKKKQRG RQQNRQPKSP KPKKPKKIAV PLEDGALNGH APRRRGPKKT 240 VGMVINGIEL DLATIPTPVC SCTGAPQQCY RWGPGGWQSA CCTTSISTYP LPMSTKRRGA 300 RISGRKMSQG AFKKVLEKLA GEGYNLANPI DLKTFWAKHG TNKFVTIR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033197 | 0.0 | BT033197.1 Zea mays full-length cDNA clone ZM_BFb0064P02 mRNA, complete cds. |
GenBank | BT064598 | 0.0 | BT064598.1 Zea mays full-length cDNA clone ZM_BFc0188M02 mRNA, complete cds. |
GenBank | EU966370 | 0.0 | EU966370.1 Zea mays clone 293939 GAGA-binding protein mRNA, complete cds. |