PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

ERF

Protein Properties

Length: 202aa MW: 20357.7 Da PI: 10.4946

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G052600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.8e-17	57	106	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g Sobic.010G052600.1.p 57 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 106 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.6E-31	56	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.972	57	114	IPR001471	AP2/ERF domain
SMART	SM00380	2.8E-37	57	120	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	57	106	IPR001471	AP2/ERF domain
CDD	cd00018	8.06E-27	57	116	No hit	No description
SuperFamily	SSF54171	9.81E-22	57	116	IPR016177	DNA-binding domain
PRINTS	PR00367	5.6E-12	58	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-12	96	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MERDATAFCP PPQPAPAAPV SVPPATVLGA GGGAVAAAAG HGRGGGGGGG GGGGGRQYRG 60 VRMRKWGKWV AEIREPNKRS RIWLGSYSTA VAAARAYDTA VFYLRGRSAR LNFPDQLDGA 120 AVADNPEGHR DGGAGAGLTA AAIRKKAAEV GARVDALHCG VGVGLAGGGA ASPQPLSSHH 180 RRRPKNPDLN REPTPDTSDD E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	7e-16	55	118	3	67	ATERF1
3gcc_A	7e-16	55	118	3	67	ATERF1
5wx9_A	8e-16	47	118	4	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	55	RGGGGGGGGGGGGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.5247	0.0	callus\| ovary\| pollen\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00276	DAP	Transfer from AT2G23340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G052600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955682	1e-117	EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436552.1	1e-139	ethylene-responsive transcription factor RAP2-1
Swissprot	O22174	6e-45	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	C5Z4W7	1e-138	C5Z4W7_SORBI; Uncharacterized protein
STRING	Sb10g004580.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3943	30	75
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	1e-29	DREB and EAR motif protein 3

Link Out ? help Back to Top
Phytozome	Sobic.010G052600.1.p
Entrez Gene	8076148

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]