PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G051800.1.p
Common NameSb10g004500, SORBIDRAFT_10g004500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 292aa    MW: 31727.4 Da    PI: 6.1299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-1687133455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Sobic.010G051800.1.p  87 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 133
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-2080143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-2180143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07683132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-1786137No hitNo description
PfamPF000108.0E-1487133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1889138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALLQHHDQR RRQQLEEEED DEAVRRQMFG GLAAYPAALG HGHQVDYGED AGGLGDSDAG  60
GSEPEAPPER TRGGGGSGSK RSRAAEVHNL SEKRRRSKIN EKMKALQSLI PNSNKTDKAS  120
MLDEAIEYLK QLQLQVQMLS MRNGVYLNPP YLSGAIEPAQ ASQMFAALGG GNITASSSGA  180
VMPPVNQSSG VHQAFDPLNP PRNQPLSFVL PNVDKTIQEA PFHLESSQSH LRTFRMPESS  240
EMMLPGEVVA KHQLTSTQER VSLPGIDMNP IRQESSIVNA DHFDGCSHSK E*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G051800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353600.0BT035360.1 Zea mays full-length cDNA clone ZM_BFb0057H06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436548.20.0transcription factor bHLH78
TrEMBLA0A1W0VRK20.0A0A1W0VRK2_SORBI; Uncharacterized protein
STRINGSb10g004500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-36bHLH family protein